[HTML][HTML] GoMiner: a resource for biological interpretation of genomic and proteomic data

…, AT Fojo, M Sunshine, S Narasimhan, DW Kane… - Genome biology, 2003 - Springer
We have developed GoMiner, a program package that organizes lists of 'interesting' genes (for
example, under- and overexpressed genes from a microarray experiment) for biological …

Musculoskeletal ultrasound including definitions for ultrasonographic pathology.

…, WA Schmidt, GAW Bruyn, G Bruyn, D Kane… - The Journal of …, 2005 - jrheum.org
Ultrasound (US) has great potential as an outcome in rheumatoid arthritis trials for detecting
bone erosions, synovitis, tendon disease, and enthesopathy. It has a number of distinct …

The BioPAX community standard for pathway data sharing

…, L Gong, R Haw, M Honig, O Hubaut, D Kane… - Nature …, 2010 - nature.com
Biological Pathway Exchange (BioPAX) is a standard language to represent biological
pathways at the molecular and cellular level and to facilitate the exchange of pathway data. The …

A prospective, clinical and radiological study of early psoriatic arthritis: an early synovitis clinic experience

D Kane, L Stafford, B Bresnihan, O FitzGerald - Rheumatology, 2003 - academic.oup.com
Objective. To determine the clinical presentation and clinical and radiological outcome of early
psoriatic arthritis (PsA) at 1 and 2 yr. Methods. Patients with PsA were assessed at the St. …

Nova regulates brain-specific splicing to shape the synapse

…, T Clark, C Fraser, M Ruggiu, BR Zeeberg, D Kane… - Nature …, 2005 - nature.com
Alternative RNA splicing greatly increases proteome diversity and may thereby contribute to
tissue-specific functions. We carried out genome-wide quantitative analysis of alternative …

[HTML][HTML] TCPA: a resource for cancer functional proteomics data

…, JY Yang, BM Broom, RGW Verhaak, DW Kane… - Nature …, 2013 - nature.com
Functional proteomics represents a powerful approach to understand the pathophysiology
and therapy of cancer. However, comprehensive cancer proteomic data have been relatively …

[HTML][HTML] High-Throughput GoMiner, an'industrial-strength'integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies …

…, S Narasimhan, M Sunshine, H Cao, DW Kane… - BMC …, 2005 - Springer
Background We previously developed GoMiner, an application that organizes lists of 'interesting'
genes (for example, under-and overexpressed genes from a microarray experiment) for …

Ultrasonography is superior to clinical examination in the detection and localization of knee joint effusion in rheumatoid arthritis.

D Kane, PV Balint, RD Sturrock - The Journal of rheumatology, 2003 - jrheum.org
OBJECTIVE: Musculoskeletal ultrasonography allows real-time imaging of joint structures
and may be used to complement clinical examination in rheumatological practice. We …

Scoring ultrasound synovitis in rheumatoid arthritis: a EULAR-OMERACT ultrasound taskforce—Part 1: definition and development of a standardised, consensus …

…, W Grassi, A Iagnocco, S Jousse-Joulin, D Kane… - RMD open, 2017 - rmdopen.bmj.com
Objectives To develop a consensus-based ultrasound (US) definition and quantification
system for synovitis in rheumatoid arthritis (RA). Methods A multistep, iterative approach was …

[HTML][HTML] CellMiner: a relational database and query tool for the NCI-60 cancer cell lines

UT Shankavaram, S Varma, D Kane, M Sunshine… - BMC genomics, 2009 - Springer
Background Advances in the high-throughput omic technologies have made it possible to
profile cells in a large number of ways at the DNA, RNA, protein, chromosomal, functional, and …